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No, It's before you fight Arihama! (: I don't remember the details, but it's while you're recruiting more people to fight him

When you defeat Bradley, you have to return to where Cicero was to free him. Then, when you travel to his planet and he leaves your ship, you have to talk to Snake and tell him that "you're looking for someone". I don't remember very well, but I THINK Cicero asks you for something and once you accomplish it he joins your crew

Well, I already take Levi to his mother and made "master X" my slave. I'm kind of stuck, I don't know where to go from there or what comes first.

I see that there are some "missions" like stealing the synthetic brain that can't be done yet, so I'm a bit lost. Can you help me?

If I broke up with Snake, can I get back with him? In order to complete his "request"

Can I change my “appearance", or do I have to restart the game to do it?